PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g54070.1.p
Common NameBRADI_3g54070, LOC100827783
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 352aa    MW: 35879.9 Da    PI: 5.5833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g54070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12155200555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Bradi3g54070.1.p 155 HSIAERLRRERIAERMKALQELVPSA-----NKTDKASMLDEIIDYVKFLQ 200
                       99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.85E-13148204No hitNo description
SuperFamilySSF474591.06E-16148209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.161150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9155200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MQPAGHGGGG GGQDDFLDQM LSALPPAWAE LASPKPPWEL PSAAGGDDDE STLLASRLRH  60
HQISGGGGGG NDELRLGELR SHGLDGGGGF LPLPLFADRS RDDFVAAGMH GGVASAAVHT  120
PFGQAGSMPA PPPPPAVAPP RQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPSA  180
NKTDKASMLD EIIDYVKFLQ VQVKVLSMSR LGGAGAVAPL VANMSPEDNG NGDGTSSSGW  240
DGNAGNSDDN GGGSTLRATE EQVSRLMEED MGSAMQYLQG KGLCLMPISL ASLISSATSP  300
SPLLPHRMGH ATAGGGGVLR ADGSPASPPS LVNGSTGGDS QSNKDTGAGG R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570296.10.0PREDICTED: transcription factor bHLH82-like
TrEMBLI1IDG00.0I1IDG0_BRADI; Uncharacterized protein
STRINGBRADI3G54070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-35LJRHL1-like 3